PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G23410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 335aa    MW: 35902.1 Da    PI: 4.71
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G23410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
  LPERR02G23410.1 16 RGSWTPQEDMRLIAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP

2Myb_DNA-binding51.52.4e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
  LPERR02G23410.1  69 RGNFTADEEETIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.361163IPR017930Myb domain
SuperFamilySSF466891.05E-2913110IPR009057Homeodomain-like
SMARTSM007171.1E-121565IPR001005SANT/Myb domain
PfamPF002493.3E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-231770IPR009057Homeodomain-like
CDDcd001672.88E-101863No hitNo description
PROSITE profilePS5129424.07164118IPR017930Myb domain
SMARTSM007172.5E-1468116IPR001005SANT/Myb domain
PfamPF002491.8E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2671118IPR009057Homeodomain-like
CDDcd001678.80E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTADEEETI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVAQ  120
SQRDQQQQRP TKNKAKAADA SDADTHSPSS SASSSTTANN NGGTACGESK APETIDVSLL  180
EPDIDISDML LDAPPPLTDP LLAAAPPMPP SSPCSSSSLT TTTCVGAVSG DQLLDLPEID  240
IEPEIWSIID GYGDATVTCT TAAANAASAS PGEDEGTELW LENLEKELGL WGPTDEPMAH  300
PDPLGQVCYT GPLTETQGDP VSTYFQEIGS SAVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-27141182105MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-27141182105C-Myb DNA-Binding Domain
1msf_C5e-27141182105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647724.11e-167PREDICTED: myb-related protein Zm1-like
SwissprotP200241e-128MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A0D9VJS10.0A0A0D9VJS1_9ORYZ; Uncharacterized protein
STRINGOB02G35920.11e-167(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-68myb domain protein 63